Abalone software download is a tool for molecular simulation software in chemistry and bioinformatics. With this software you can simulate a variety of compounds and structures such as proteins, hydrocarbons, perfluorocarbons, heavy elements and Any molecule via a default FF.
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molecular dynamics software
OVITO software is a scientific visualization and analysis software for atomistic and particle simulation data. It helps scientists gain better insights into materials phenomena and physical processes. OVITO Basic is freely available for all major platforms under an open source license. It has served in a growing number of computational simulation studies as a powerful tool to analyze, understand and illustrate simulation results. OVITO software has the ability to work with various formats such as LAMMPS, XYZ, IMD, CFG, POSCAR, AMBER / NetCDF, PDB, GSD / HOOMD and VTK.
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Qbox software free download is a tools for molecular dynamics simulation in computational chemistry. Qbox is a C++/MPI scalable parallel implementation of first-principles molecular dynamics (FPMD) based on the plane-wave, pseudopotential formalism. Qbox is designed for operation on large parallel computers.
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BioVEC software free download is a tool for visualizing molecular dynamics simulation data while allowing coarse-grained residues to berendered as ellipsoids in biochemistry. The use of coarse-graining methods in biomolecular simulation is progressively increasing, mainly to circumvent the current time-scale problem that exists for all-atom molecular dynamics simulations, and to allow for the computational modelling of ever larger systems which address biologically relevant questions.
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MView software download is a tool in chemistry for analysis and simulation of molecular properties. MView program has ability to study molecular dynamic trajectories and clustering molecular dynamics trajectories.
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VMD software free download for windowx, Linux and macOS (Visual Molecular Dynamics) is a molecular modeling and visualization software in chemistry for viewing and analyzing the results of molecular dynamics simulations. This tool provides editable “materials” that can be applied to a molecular geometry and controls the details of how the molecular geometry is shaded and how transparent or opaque the displayed molecular geometry is.
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